Carcinogenesis, Biomarkers & Epidemiology Program
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Selected Publications
2007
Ahn C, Koch GG, Paynter L, Preisser J, Seillier-Moiseiwitsch F. Log-linear models for mutations in the HIV genome. Journal of Statistical Planning and Inference 2007;137:3227-3239.
Ambrosone CB, Shields PG, Freudenheim JL, Hong CC. Re: Commonly studied single-nucleotide polymorphisms and breast cancer: results from the Breast Cancer Association Consortium. J Natl Cancer Inst 2007;99(6):487-489.
Audrain-McGovern J, Al KN, Rodriguez D, Wileyto EP, Shields PG, Tyndale RF. The role of CYP2A6 in the emergence of nicotine dependence in adolescents. Pediatrics 2007;119(1):e264-e274.
Abdel-Hamid M, El-Daly M, Molnegren V, El-Kafrawy S, Abdel-Latif S, Esmat G, Strickland GT, Loffredo C, Albert J, Widell A. Genetic diversity in hepatitis C virus in Egypt and possible association with hepatocellular carcinoma. J Gen Virol 2007;88(Pt 5):1526-1531.
Bebu I, Seillier-Moiseiwitsch F, Liu H. Semiparametric RMA Background Correction for Oligonucleotide Arrays. In: Proceeding of the IEEE 7th International Conference on Bioinformatics and Bioengineering (BIBE), pp. 1404-1408, Boston, Massachusetts, 2007.
Bochtler W, Maiers M, Oudshoorn M, Marsh SGE, Raffoux C, Mueller C, Hurley CK. World Marrow Donor Association guidelines for use of HLA nomenclature and its validation in the data exchange among hematopoietic stem cell donor registries and cord blood banks. Bone Marrow Transplantation 2007;39:737-41.
Boudreau HE, Broustas CG, Gokhale PC, Kumar D, Mewani RR, Rone JD, Haddad BR, Kasid U. Expression of BRCC3, a novel cell cycle regulated molecule, is associated with increased phospho-ERK and cell proliferation. Int J Mol Med 2007;19(1):29-39.
Cheng C, Yun KY, Ressom HW, Mohanty B, Bajic VB, Jia Y, Yun SJ, de los Reyes BG. An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice. BMC Genomics 2007;8:175.
David SP, Strong DR, Munafo MR, Brown RA, Lloyd-Richardson EE, Wileyto PE, Evins EA, Shields PG, Lerman C, Niaura R. Bupropion efficacy for smoking cessation is influenced by the DRD2 Taq1A polymorphism: Analysis of pooled data from two clinical trials. Nicotine Tob Res 2007;9(12):1251-1257.
David SP, Brown RA, Papandonatos GD, Kahler CW, Lloyd-Richardson EE, Munafo MR, Shields PG, Lerman C, Strong D, McCaffery J, Niaura R. Pharmacogenetic clinical trial of sustained-release bupropion for smoking cessation. Nicotine Tob Res 2007;9(8):821-833.
Doghman M, Karpova T, Rodrigues GA, Arhatte M, De MJ, Cavalli LR, Virolle V, Barbry P, Zambetti GP, Figueiredo BC, Heckert LL, Lalli E. Increased steroidogenic factor-1 dosage triggers adrenocortical cell proliferation and cancer. Mol Endocrinol 2007;21(12):2968-2987.
Ganesan N, Kato S, Bowman ED, Shields PG. N-7-Alkyl-2'-Deoxyguanosine as surrogate biomarkers for N-nitrosamine exposure in human lung. Int J Canc Prev 2007;2(4):265-277.
Gedil MA, Steiner NK, Hurley CK. KIR3DL2: Diversity in a hematopoietic stem cell transplant population. Tissue Antigens 2007;70:228-32.
Goldman R, Ressom HW, bdel-Hamid M, Goldman L, Wang A, Varghese RS, An Y, Loffredo CA, Drake SK, Eissa SA, Gouda I, Ezzat S, Moiseiwitsch FS. Candidate markers for the detection of hepatocellular carcinoma in low-molecular weight fraction of serum. Carcinogenesis 2007;28(10):2149-2153.
Goodridge JP, Lathbury LJ, Steiner NK, Shulse CN, Pullikotil P, Seidah Ng, Hurley CK, Christiansen FT, Witt CS. Three common alleles of KIR2DL4 (CD158d) encode constitutively expressed, inducible and secreted receptors in NK cells. Eur J Immunol 2007;37:199-211.
Gu J, Soldin OP, Soldin SJ. Simultaneous quantification of free triiodothyronine and free thyroxine by isotope dilution tandem mass spectrometry. Clin Biochem 2007;40(18):1386-1391.
Hazra TK, Das A, Das S, Choudhury S, Kow YW, Roy R. Oxidative DNA damage repair in mammalian cells: a new perspective. DNA Repair Amst2007;6(4):470-80.
Hou L, Chen M, Steiner NK, Belle I, Turino C, Ng J, Hurley CK. Seventeen novel alleles add to the already extensive KIR3DL3 diversity. Tissue Antigens 2007;70:449-454.
Hou L, Steiner N, Chen M, Belle I, Ng J, Hurley CK. KIR2DL1 allelic diversity: Four new alleles characterized in a bone marrow transplant population and three families. Tissue Antigens 2007;69:250-254.
Hurley CK, Fernandez-Vina M, Hildebrand W, Noreen H, Trachtenberg E, Williams T, Baxter-Lowe L, Begovich A, Petersdorf E, Selvakumar A, Stastny P, Hegland J, Hartzman R, Carston M, Gandham S, Kollman S, Nelson G, Spellman S, Setterholm M. A high degree of HLA disparity arises from limited allelic diversity: analysis of 1775 unrelated bone marrow transplant donor-recipient pairs. Human Immunology 2007;68:30-40.
Hurley CK, Maiers M, Marsh SG, Oudshoorn M. Overview of registries, HLA typing and diversity, and search algorithms. Tissue Antigens 2007;69(Suppl 1):3-5.
Jorgensen TJ, Visvanathan K, Ruczinski I, Thuita L, Hoffman S, Helzlsouer KJ. Breast cancer risk is not associated with polymorphic forms of xeroderma pigmentosum genes in a cohort of women from Washington County, Maryland. Breast Cancer Res Treat 2007;101(1):65-71.
Jorgensen TJ, Tian H, Joseph IB, Menon K, Frost D. Chemosensitization and radiosensitization of human lung and colon cancers by antimitotic agent, ABT-751, in athymic murine xenograft models of subcutaneous tumor growth. Cancer Chemother Pharmacol 2007;59(6):725-732.
Kahric-Janicic N, Soldin SJ, Soldin OP, West T, Gu J, Jonklaas J. Tandem mass spectrometry improves the accuracy of free thyroxine measurements during pregnancy. Thyroid 2007;17(4):303-311.
Kim JS, Lee C, Bonifant CL, Ressom H, Waldman T. Activation of p53-dependent growth suppression in human cells by mutations in PTEN or PIK3CA. Mol Cell Biol 2007;27(2):662-677.
Kollman C, Maiers M, Gragert L, Müller C, Setterholm M, Oudshoorn M, Hurley CK. Estimation of HLA-A, -B, -DRB1 haplotype frequencies utilizing mixed resolution data from a national registry with selective retyping of volunteers. Human Immunology 2007;68:950-8.
Kozikowski AP, Chellappan SK, Henderson D, Fulton R, Giboureau N, Xiao Y, Wei ZL, Guilloteau D, Emond P, Dolle F, Kellar KJ, Kassiou M. Acetylenic Pyridines for Use in PET Imaging of Nicotinic Receptors. ChemMedChem 2007;2(1):54-57.
Kozikowski AP, Chellappan SK, Xiao Y, Bajjuri KM, Yuan H, Kellar KJ, Petukhov PA. Chemical Medicine: Novel 10-Substituted Cytisine Derivatives with Increased Selectivity for alpha4beta2 Nicotinic Acetylcholine Receptors. ChemMedChem 2007;2(8):1157-1161.
Labib N, Radwan G, Mikhail N, Mohamed MK, Setouhy ME, Loffredo C, Israel E. Comparison of cigarette and water pipe smoking among female university students in Egypt. Nicotine Tob Res 2007;9(5):591-596.
Lazaro AM, Xiao Y, Cao K, Masaberg C, Nichol L, Ng J, Hurley CK, Posch PE. Thirty-two novel HLA-A alleles identified during intermediate resolution testing. Tissue Antigens 2007;71:165-168.
Lee AM, Jepson C, Shields PG, Benowitz N, Lerman C, Tyndale RF. CYP2B6 genotype does not alter nicotine metabolism, plasma levels, or abstinence with nicotine replacement therapy. Cancer Epidemiol Biomarkers Prev 2007;16(6):1312-1314.
Lin J, Swan GE, Shields PG, Benowitz NL, Gu J, Amos CI, de AM, Spitz MR, Wu X. Mutagen sensitivity and genetic variants in nucleotide excision repair pathway: genotype-phenotype correlation. Cancer Epidemiol Biomarkers Prev 2007;16(10):2065-2071.
Li J, Lazaro AM, Xiao Y, Ng J, Hurley CK. Identification of of two new HLA-B alleles, HLA-B *4069 and B*5409, from the Liaoning province of China. Tissue Antigens 2007;70:345-6.
Lee SJ, Klein J, Haagenson M, Baxter-Lowe LA, Confer SL, Eapen M, Fernandez-Vina M, Flomenberg N, Horowitz M, Hurley CK, 7 other authors, Anasetti C. High resolution donor-recipient HLA matching contributes to the success of unrelated donor marrow transplantation. Blood 2007;110:4576-83.
Ma Y, Hu C, Riegel AT, Fan S, Rosen EM. Growth factor signaling pathways modulate BRCA1 repression of estrogen receptor-alpha activity. Mol Endocrinol 2007;21(8):1905-1923.
Mao D, Perry DC, Yasuda RP, Wolfe BB, Kellar KJ. The alpha4beta2alpha5 nicotinic cholinergic receptor in rat brain is resistant to up-regulation by nicotine in vivo. J Neurochem 2007.
McCann SE, Wactawski-Wende J, Kufel K, Olson J, Ovando B, Kadlubar SN, Davis W, Carter L, Muti P, Shields PG, Freudenheim JL. Changes in 2-hydroxyestrone and 16alpha-hydroxyestrone metabolism with flaxseed consumption: modification by COMT and CYP1B1 genotype. Cancer Epidemiol Biomarkers Prev 2007;16(2):256-262.
Mechanic LE, Bowman ED, Welsh JA, Khan MA, Hagiwara N, Enewold L, Shields PG, Burdette L, Chanock S, Harris CC. Common genetic variation in TP53 is associated with lung cancer risk and prognosis in African Americans and somatic mutations in lung tumors. Cancer Epidemiol Biomarkers Prev 2007;16(2):214-222.
Mi L, Wang X, Govind S, Hood BL, Veenstra TD, Conrads TP, Saha DT, Goldman R, Chung FL: The role of protein binding in induction of apoptosis by phenethyl isothiocyanate and sulforaphane in human non-small lung cancer cells. Cancer Res 2007;67(13):6409-6416.
Moaddel R, Oliveira RV, Kimura T, Hyppolite P, Juhaszova M, Xiao Y, Kellar KJ, Bernier M, Wainer IW. Initial Synthesis and Characterization of an alpha7 Nicotinic Receptor Cellular Membrane Affinity Chromatography Column: Effect of Receptor Subtype and Cell Type. Anal Chem 2007.
Perry DC, Mao D, Gold AB, McIntosh JM, Pezzullo JC, Kellar KJ. Chronic nicotine differentially regulates alpha6- and beta3-containing nicotinic cholinergic receptors in rat brain. J Pharmacol Exp Ther 2007;322(1):306-315.
Pine SR, Mechanic LE, Ambs S, Bowman ED, Chanock SJ, Loffredo C, Shields PG, Harris CC. Lung cancer survival and functional polymorphisms in MBL2, an innate-immunity gene. J Natl Cancer Inst 2007;99(18):1401-1409.
Pinsky P, Freedman M, Oken M, Kvale P, Caporaso N, Gohagan J. Prevalence of non-cancer-related abnormalities on low-dose spiral computer tomography versus chest radiograph in a screening population. Thorax 2007;62(2):190.
Radwan GN, Setouhy ME, Mohamed MK, Hamid MA, Israel E, Azem SA, Kamel O, Loffredo CA. DRD2/ANKK1 TaqI polymorphism and smoking behavior of Egyptian male cigarette smokers. Nicotine Tob Res 2007;9(12):1325-1329.
Rae JM, Creighton CJ, Meck JM, Haddad BR, Johnson MD. MDA-MB-435 cells are derived from M14 melanoma cells--a loss for breast cancer, but a boon for melanoma research. Breast Cancer Res Treat 2007;104(1):13-19.
Ressom HW, Varghese RS, Drake SK, Hortin GL, bdel-Hamid M, Loffredo CA, Goldman R. Peak selection from MALDI-TOF mass spectra using ant colony optimization. Bioinformatics 2007;23(5):619-626.
Rhomberg LR, Baetcke K, Blancato J, Bus J, Cohen S, Conolly R, Dixit R, Doe J, Ekelman K, Fenner-Crisp P, Harvey P, Hattis D, Jacobs A, Jacobson-Kram D, Lewandowski T, Liteplo R, Pelkonen O, Rice JM, Somers D, Turturro A, West W, and Olin S. Issues in the design and interpretation of chronic toxicity and carcinogenicity studies in rodents: Approaches to dose selection.Crit. Rev. Toxicol 2007;37:729-837.
Schnoll RA, Epstein L, Audrain J, Niaura R, Hawk L, Shields PG, Lerman C, Wileyto EP. Can the blind see? Participant guess about treatment arm assignment may influence outcome in a clinical trial of bupropion for smoking cessation. J Subst Abuse Treat 2007;34(2):234-241.
Shulse C, Steiner NK, Hurley CK. Allelic diversity in KIR2DL4 in a bone marrow transplant population: description of three novel alleles. Tissue Antigens 2007;70:157-9.
Soldin OP, Soldin D, Sastoque M. Gestation-specific thyroxine and thyroid stimulating hormone levels in the United States and worldwide. Ther Drug Monit 2007;29(5):553-559.
Tamimi RM, Byrne C, Colditz GA, Hankinson SE. Endogenous hormone levels, mammographic density, and subsequent risk of breast cancer in postmenopausal women. J Natl Cancer Inst 2007;99(15):1178-1187.
Tammemagi CM, Freedman MT, Church TR, Oken MM, Hocking WG, Kvale PA, Hu P, Riley TL, Ragard LR, Prorok PC, Berg CD. Factors associated with human small aggressive non small cell lung cancer. Cancer Epidemiol Biomarkers Prev 2007;16(10):2082-2089.
Tang TF, Hou L, Chen M, Belle I, Mack S, Lancaster A, Ho GYH, Hwang WYK, Alsagoff F, Ng J, Hurley CK. HLA haplotypes in Singapore: A study of mothers and their cord blood u nits. Human Immunology 2007;68:430-8.
Tercyak KP, Davis KM, Loffredo CA. Behavioral risk factors among Black and White women newly diagnosed with breast cancer. Psychooncology 2007;16(3):224-231.
Tseng M, Byrne C, Evers KA, Daly MB. Dietary intake and breast density in high-risk women: a cross-sectional study. Breast Cancer Res 2007;9(5):R72.
Wade J, Hurley CK, Takemoto S, Thompson J, Davies S, Fuller T, Rodey G, Confer D, Noreen H, Haagenson M, Kan G, Klein J, Eapen M, Spellman S, Kollman C. HLA mismatching within or outside of cross reactive groups (CREG) is associated with similar outcomes after unrelated hematopoietic stem cell transplant. Blood 2007;109:4064-70.
Wray AM, Dennis TR, Ghidini A, Gorman B, Haddad BR, Meck JM. Prenatal diagnosis of supernumerary ring chromosome 1: case report and review of the literature. Genet Couns 2007;18(2):233-241.
Wray AM, Landy HJ, Meck JM. Patient decisions regarding prenatal aneuploid fluorescence in situ hybridization results. Int J Gynaecol Obstet 2007;96(2):103-107.
Wuicik L, Cavalli LR, Cornelio DA, Schmid Braz AT, Barbosa ML, Lima RS, Urban CA, Bleggi Torres LF, Ribeiro EM, Cavalli IJ. Chromosome alterations associated with positive and negative lymph node involvement in breast cancer. Cancer Genet Cytogenet 2007;173(2):114-121.
Xu J, Gao M, Fan S, Meng Q, Goldberg ID, Abounader R, Ressom H, Laterra JJ, Rosen EM. Effect of Akt inhibition on scatter factor-regulated gene expression in DU-145 human prostate cancer cells. Oncogene 2007;26(20):2925-2938.
