Carcinogenesis, Biomarkers & Epidemiology Program
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Selected Publications
2008
Ahn C, Seillier-Moiseiwitsch F, Koch GG. Predictive tests for linked changes. Statistics in Medicine 2008;27(23):4790-804.
Ambrosone CB, Kropp S, Yang J, Yao S, Shields PG, Chang-Claude J. Cigarette smoking, N-acetyltransferase 2 genotypes, and breast cancer risk: pooled analysis and meta-analysis. Cancer Epidemiology, Biomarkers and Prevention 2008;17(1):15-26.
Amr S, Wolpert B, Loffredo CA, Zheng YL, Shields PG, Jones R, Harris CC. Occupation, gender, race, and lung cancer. Journal of Occupational and Environmental Medicine 2008;50(10):1167-1175.
Anwar WA, Khaled HM, Amra HA, El-Nezami H, Loffredo CA. Changing pattern of hepatocellular carcinoma (HCC) and its risk factors in Egypt: Possibilities for prevention. Mutation Research 2008 July-August;659(1-2):176-84.
Bebu I, Mathew T. Comparing the means and variances of a bivariate log-normal distribution. Statistics in Medicine 2008;27(14):2684-2696.
Bebu I, Seilllier-Moiseiwitsch F, Liu H. Analysis of microarray titration experiments. BIOCOMP 2008:942-946.
Befekadu GK, Tadesse MG, Hathout Y, Ressom HW. Multi-class alignment of LC-MS data using probabilistic-based mixture regression models. Conference Proceedings IEEE Engineering in Medicine and Biological Society 2008;1:4094-7.
Berbel TO, Ortega Garcia JA, Tortajada J, Garcia CJ, Colomer J, Soldin OP, Fuster Soler JL. Neonatal tumours and congenital malformations. Anales de Pediatria (Barcelona, Spain) 2008;68(6):589-595.
Byrne C. Invited commentary: assessing breast density change--lessons for future studies. American Journal of Epidemiology 2008;167(9):1037-1040.
Cavalli LR, Man YG, Schwartz AM, Rone JD, Zhang Y, Urban CA, Lima RS, Haddad BR, Berg PE. Amplification of the BP1 homeobox gene in breast cancer. Cancer Genetics and Cytogenetics 2008;187(1):19-24.
Cavalli LR, Santos SC, Broustas CG, Rone JD, Kasid UN, Haddad BR. Assignment of the BLID gene to 11q24.1 by fluorescence in situ hybridization. Cancer Genetics and Cytogenetics 2008;186(2):120-121.
Chen J, Higby R, Tian D, Tan D, Johnson MD, Xiao Y, Kellar KJ, Feng S, Shields PG. Toxicological analysis of low-nicotine and nicotine-free cigarettes. Toxicology 2008;249(2-3):194-203.
Clarke R, Ressom HW, Wang A, Xuan J, Liu MC, Gehan EA, Wang Y. The properties of high-dimensional data spaces: implications for exploring gene and protein expression data. Nature Reviews Cancer 2008;8(1):37-49.
Cordero DR, Bendavid C, Shanske AL, Haddad BR, Muenke M. Holoprosencephaly-Polydactyly syndrome: in search of an etiology. European Journal of Medical Genetics 2008;51(2):106-112.
Cox BC, Marritt AM, Perry DC, Kellar KJ. Transport of multiple nicotinic acetylcholine receptors in the rat optic nerve: high densities of receptors containing alpha6 and beta3 subunits. Journal of Neurochemistry 2008;105(5):1924-1938.
Cucchiaro G, Xiao Y, Gonzalez-Sulser A, Kellar KJ. Analgesic effects of Sazetidine-A, a new nicotinic cholinergic drug. Anesthesiology 2008;109(3):512-519.
Dagvadorj A, Tan SH, Liao Z, Cavalli LR, Haddad BR, Nevalainen MT. Androgen-regulated and highly tumorigenic human prostate cancer cell line established from a transplantable primary CWR22 tumor. Clinical Cancer Research 2008;14(19):6062-6072.
Emami A, Dyba M, Cheema AK, Pan J, Nath RG, Chung FL. Detection of the acrolein-derived cyclic DNA adduct by a quantitative (32)P-postlabeling/solid-phase extraction/HPLC method: Blocking its artifact formation with glutathione. Analytical Biochemistry 2008;37(4):1-163.
Evans RW, Soldin OP. More on serotonin syndrome associated with triptan monotherapy. The New England Journal of Medicine 2008;359(8):870-871.
Freedman MT, Osicka T. Heat maps: an aid for data analysis and understanding of ROC CAD experiments. Academic Radiology 2008;15(2):249-259.
Fuhrman BJ, Teter BE, Barba M, Byrne C, Cavalleri A, Grant BJ, Horvath PJ, Morelli D, Venturelli E, Muti PC. Equol status modifies the association of soy intake and mammographic density in a sample of postmenopausal women. Cancer Epidemiology, Biomarkers & Prevention 2008;17(1):33-42.
Gao Y, Kuwabara H, Spivak CE, Xiao Y, Kellar K, Ravert HT, Kumar A, Alexander M, Hilton J, Wong DF, Dannals RF, Horti AG. Discovery of (-)-7-methyl-2-exo-[3'-(6-[18F]fluoropyridin-2-yl)-5'-pyridinyl]-7-azabicy clo[2.2.1]heptane, a radiolabeled antagonist for cerebral nicotinic acetylcholine receptor (alpha4beta2-nAChR) with optimal positron emission tomography imaging properties. Journal of Medicinal Chemistry 2008;51(15):4751-4764.
Guo T, Gu J, Soldin OP, Singh RJ, Soldin SJ. Rapid measurement of estrogens and their metabolites in human serum by liquid chromatography-tandem mass spectrometry without derivatization. Clinical Biochemistry 2008;41(9):736-741.
Ihemelandu CU, Naab TJ, Mezghebe HM, Makambi KH, Siram SM, Lefafall LD Jr, Dewitty RL, Frederick WA. Treatment and survival outcome for molecular breast cancer subtypes in black women. Annals of Surgery 2008;247:463-469.
Ihemelandu CU, Naab TJ, Mezghebe HM, Makambi KH, Siram SM, Leffall LD Jr, DeWitty RL Jr, Frederick WA. Basal cell–like (triple-negative) breast cancer, a predictor of distant metastasis in African American women. The American Journal of Surgery2008;195:153-158.
Isailovic D, Kurulugama RT, Plasencia MD, Stokes ST, Kyselova Z, Goldman R, Mechref Y, Novotny MV, Clemmer DE. Profiling of human serum glycans associated with liver cancer and cirrhosis by IMS-MS. Journal of Proteome Research 2008;7(3):1109-1117.
Kondo Y, Shen L, Ahmed S, Boumber Y, Sekido Y, Haddad BR, Issa JP. Downregulation of histone H3 lysine 9 methyltransferase G9a induces centrosome disruption and chromosome instability in cancer cells. PLoS ONE 2008;3(4):e2037.
Mao D, Perry DC, Yasuda RP, Wolfe BB, Kellar KJ. The alpha4beta2alpha5 nicotinic cholinergic receptor in rat brain is resistant to up-regulation by nicotine in vivo. Journal of Neurochemistry 2008;104(2):446-456.
Mi L, Xiao Z, Hood BL, Dakshanamurthy S, Wang X, Govind S, Conrads TP, Veenstra TD, Chung FL. Covalent binding to tubulin by isothiocyanates. A mechanism of cell growth arrest and apoptosis. Journal of Biological Chemistry 2008;283(32):22136-22146.
Moaddel R, Oliveira RV, Kimura T, Hyppolite P, Juhaszova M, Xiao Y, Kellar KJ, Bernier M, Wainer IW. Initial synthesis and characterization of an alpha7 nicotinic receptor cellular membrane affinity chromatography column: effect of receptor subtype and cell type. Analytical Chemistry 2008;80(1):48-54.
Moy KA, Yuan JM, Chung FL, Van Den BD, Wang R, Gao YT, Yu MC. Urinary total isothiocyanates and colorectal cancer: a prospective study of men in Shanghai, China. Cancer Epidemiology, Biomarkers & Prevention 2008;17(6):1354-1359.
Ortega-Garcia JA, Ferris-Tortajada J, Torres-Cantero AM, Soldin OP, Torres EP, Fuster-Soler JL, Lopez-Ibor B, Madero-Lopez L. Full breastfeeding and paediatric cancer. Journal of Paediatric Child Health 2008;44(1-2):10-13.
Patterson F, Schnoll R, Wileyto E, Pinto A, Epstein L, Shields P, Hawk L, Tyndale R, Benowitz N, Lerman C. Toward Personalized Therapy for Smoking Cessation: A Randomized Placebo-controlled Trial of Bupropion. Clinical Pharmacology and Therapeutics 2008 September;84(3):320-5.
Quick SK, Shields PG, Nie J, Platek ME, McCann SE, Hutson AD, Trevisan M, Vito D, Modali R, Lehman TA, Seddon M, Edge SB, Marian C, Muti P, Freudenheim JL. Effect modification by catalase genotype suggests a role for oxidative stress in the association of hormone replacement therapy with postmenopausal breast cancer risk. Cancer Epidemiology, Biomarkers & Prevention 2008;17(5):1082-1087.
Ressom HW, Varghese RS, Goldman L, Loffredo CA, Abdel-Hamid M, Kyselova Z, Mechref Y, Novotny M, Goldman R. Analysis of MALDI-TOF mass spectrometry data for detection of glycan biomarkers. Pacific Symposium on Biocomputing 2008;216-227.
Ressom HW, Varghese RS, Zhang Z, Xuan J, Clarke R. Classification algorithms for phenotype prediction in genomics and proteomics. Frontiers in Bioscience 2008;13:691-708.
Ressom HW, Varghese RS, Goldman L, An Y, Loffredo CA, Abdel-Hamid M, Kyselova Z, Mechref Y, Novotny M, Drake SK, Goldman R. Analysis of MALDI-TOF mass spectrometry data for discovery of peptide and glycan biomarkers of hepatocellular carcinoma. Journal of Proteome Research 2008;7(2):603-610.
Riggins RB, Lan JP, Klimach U, Zwart A, Cavalli LR, Haddad BR, Chen L, Gong T, Xuan J, Ethier SP, Clarke R. ERRgamma mediates tamoxifen resistance in novel models of invasive lobular breast cancer. Cancer Research 2008;68(21):8908-8917.
Safavi H, Correa N, Xiong W, Roy A, Adali T, Korostyshevskiy V, Whisnant C, Seillier-Moiseiwitsch F. Independent component analysis of 2D electrophoresis gels. Electrophoresis, 2008 October 29;(19):4017-26.
Saha DT, Davidson BJ, Wang A, Pollock AJ, Orden RA, Goldman R. Quantification of DNA repair capacity in whole blood of patients with head and neck cancer and healthy donors by comet assay. Mutation Research 2008;650(1):55-62.
Santos SCL, Cavalli IJ, Ribeiro EMSF, Urban CA, Lima RS, Bleggi-Torres LF, Rone JD, Haddad BR, Cavalli LR. Patterns of DNA copy number changes in sentinel lymph node breast cancer metastasis. Cytogenetic and Genome Research 2008;122:16-21.
Soldin OP, Tonning JM. Serotonin syndrome associated with triptan monotherapy. New England Journal of Medicine 2008;358(20):2185-2186.
Soldin OP. More on serotonin syndrome associated with triptan monotherapy. New England Journal of Medicine 2008;359:870-871.
Soldin OP, Dahlin JR, Gresham EG, King J, Soldin SJ. IMMULITE(R) 2000 age and sex-specific reference intervals for alpha fetoprotein, homocysteine, insulin, insulin-like growth factor-1, insulin-like growth factor binding protein-3, C-peptide, immunoglobulin E and intact parathyroid hormone. Clinical Biochemistry 2008;41(12):937-942.
Soldin OP, O'Mara DM, Aschner M. Thyroid Hormones and Methylmercury Toxicity. Biological Trace Element Research 2008;126(1-3):1-12.
Soldin OP, Dahlin J, O'Mara DM. Triptans in pregnancy. Therapeutic Drug Monitoring 2008;30(1):5-9.
Solomon DA, Kim JS, Jenkins S, Ressom H, Huang M, Coppa N, Mabanta L, Bigner D, Yan H, Jean W, Waldman T. Identification of p18 INK4c as a tumor suppressor gene in glioblastoma multiforme. Cancer Research 2008;68(8):2564-2569.
Solomon DA, Kim JS, Cronin JC, Sibenaller Z, Ryken T, Rosenberg SA, Ressom H, Jean W, Bigner D, Yan H, Samuels Y, Waldman T. Mutational inactivation of PTPRD in glioblastoma multiforme and malignant melanoma. Cancer Research. 2008 Dec 15;68(24):10300-6.
Song J, Liu H, Ressom HW, Tiwari S, Ecelbarger CM. Chronic rosiglitazone therapy normalizes expression of ACE1, SCD1 and other genes in the kidney of obese Zucker rats as determined by microarray analysis. Experimental and Clinical Endocrinoligal & Diabetes 2008;116(6):315-325.
Tan D, Goerlitz DS, Dumitrescu RG, Han D, Seillier-Moiseiwitsch F, Spernak SM, Orden RA, Chen J, Goldman R, Shields PG. Associations between cigarette smoking and mitochondrial DNA abnormalities in buccal cells. Carcinogenesis 2008;29(6):1170-1177.
Tang Y, Kitisin K, Jogunoori W, Li C, Deng CX, Mueller SC, Ressom HW, Rashid A, He AR, Mendelson JS, Jessup JM, Shetty K, Zasloff M, Mishra B, Reddy EP, Johnson L, Mishra L. Progenitor/stem cells give rise to liver cancer due to aberrant TGF-beta and IL-6 signaling. Proceedings of the Nationall Academy of Sciences of the United States of America 2008 Feb 19;105(7):2445-2450.
Tao MH, Shields PG, Nie J, Millen A, Ambrosone CB, Edge SB, Krishnan SS, Marian C, Xie B, Winston J, Vito D, Trevisan M, Freudenheim JL. DNA hypermethylation and clinicopathological features in breast cancer: the Western New York Exposures and Breast Cancer (WEB) Study. Breast Cancer Research and Treatment 2008. May 8 [EPub ahead of Print].
Thibodeaux CA, Liu X, Disbrow GL, Zhang Y, Rone JD, Haddad BR, Schlegel R. Immortalization and transformation of human mammary epithelial cells by a tumor-derived Myc mutant. Breast Cancer Research and Treatment 2008 Jul 20 [Epub ahead of print].
Turner PC, Loffredo C, Kafrawy SE, Ezzat S, Eissa SA, Daly ME, Nada O, Abdel-Hamid M. Pilot survey of aflatoxin-albumin adducts in sera from Egypt. Food Additives & Contaminants Part A 2008 May;25(5):583-587.
Wallace TA, Prueitt RL, Yi M, Howe TM, Gillespie JW, Yfantis HG, Stephens RM, Caporaso NE, Loffredo CA, Ambs S. Tumor immunobiological differences in prostate cancer between African-American and European-American men. Cancer Research 2008;68(3):927-936.
Varghese RS, Goldman L, An Y, Loffredo CA, Abdel-Hamid M, Kyselova Z, Mechref Y, Novotny M, Drake SK, Goldman R, Ressom HW. Integrated peptide and glycan biomarker discovery using MALDI-TOF mass spectrometry. Conference Proceedings IEEE Engineering in Medical and Biological Soc. 2008;1:3791-4.
Xing J, Chen M, Wood CG, Lin J, Spitz MR, Ma J, Amos CI, Shields PG, Benowitz NL, Gu J, de AM, Swan GE, Wu X. Mitochondrial DNA content: its genetic heritability and association with renal cell carcinoma. Journal of the National Cancer Institute 2008 August 6;100(15):1104-1112.
Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW. Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. BMC Bioinformatics 2008;9:203.
Zhang Y, Xuan J, de Los Reyes BG, Clarke R, Ressom HW. Network motif-based identification of breast cancer susceptibility genes. Conference Proceedings IEEE Engineering in Medicine and Biology Society. 2008;1:5696-9.
